PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002914.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27556.8 Da    PI: 9.9332
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002914.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.1e-081748940
                               HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                     SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                               ++ +f +R+ +++ KA  L  LC a+v+v+ +
  Pav_sc0002914.1_g110.1.mk 17 QSKSFNQRLSTVMRKAAHLAKLCKAQVCVVAY 48
                               5679*************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MTGRPAKKRK LMQQCEQSKS FNQRLSTVMR KAAHLAKLCK AQVCVVAYNG LNAKVKYKEA  60
VLKYKGMPKI RKVNLCGLVE RKIKGLEQKM GADDKELDKL SGESLMRLLT FLESKKPIAD  120
ILYDGEKNVG QSINNCDYLL HKELHQPLIP HVFNVSYSNN GTWPWKNYEL RDNSFQLGFA  180
NCSNNGTMTG LADQIVSAGT SDYSSSTGEW GMQSQVFVQK NMLLRWDWRS GEAIWTNITQ  240
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