PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002935.1_g060.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 239aa    MW: 27110.1 Da    PI: 6.8928
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002935.1_g060.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.23e-0980129151
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 
                                ++Y +YAk +GFsvrk+    + ++g++ +r+++Cskeg r+e+  + e++
  Pav_sc0002935.1_g060.1.br  80 EYYMSYAKVIGFSVRKDILVCN-TKGKVSRRRLCCSKEGLRNESLMSVEEN 129
                                69***************99998.7778***************998874444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MERSAKMGRG VETSKDVCSD SGYLGGCERL SHGAPTTKSG HMSTEHLVSQ SSGYNGVDIN  60
VPRREDVMGK KFKTIELAEE YYMSYAKVIG FSVRKDILVC NTKGKVSRRR LCCSKEGLRN  120
ESLMSVEENR LANLFWRNST SLLDYIAYGD VLIFDNTYKT NMYDKPPVLF VGLNNHLSIV  180
MFACVLLFDE TFETYKWVLE TFMGSMKDKK SISILTDGDE AMRKAIDDVF MTCVKEYTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-23FAR1 family protein