PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002986.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 230aa MW: 25834.3 Da PI: 8.8295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002986.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.4	1.3e-34	14	105	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++r+kC ++Cvlapyfpa+++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ + Pav_sc0002986.1_g110.1.mk 14 ACAACKHQRKKCHDGCVLAPYFPADRTREFLAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMVF 97 7******************************************************************************99999 PP DUF260 85 qqleqlka 92 +l++ k+ Pav_sc0002986.1_g110.1.mk 98 DELKRYKN 105 99998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MQRKNNDTPG TQPACAACKH QRKKCHDGCV LAPYFPADRT REFLAVHKVF GVSNVTKMVK 60 NANEANRRKV VDSLVWEALC RQKDPVLGPY GEYRMVFDEL KRYKNHEIQM VHPSQVQKGM 120 CFSKSLSDFV GWNGGGANGI TNHNINLGGY LHENENVIID SGSYGYPSNC ELQSPEKIIK 180 QAKLVDSVVL PLSQHQQRSI NNINQQYYLS GQLNQIISKP IEGTIWEGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-43	LBD family protein