PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002992.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 946aa MW: 102046 Da PI: 4.2988

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002992.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++ + rH r H Pav_sc0002992.1_g060.1.mk 20 HVCHKCGWPFPNAHPSARHRRAH 42 79*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MDSQDLARTH SSGLDSHGVH VCHKCGWPFP NAHPSARHRR AHKRICGTID GYKLAGSEKN 60 THVNDSDDEH SDEERKTPNL VSVRSEDVVF SDAVAEFSDS ASGAGTGEGL ENVRESEINL 120 ERVAKNGLNV IQSLNDGEIT ENTTNQLGAQ ELQGSLSTSN IISMTSSESA LQDDRNHSED 180 DVHPIQFEVL ADASEDSKKT HATDSVIESS LLSAPQEDKI DEIATSNLDR DLPYTVISPN 240 KVVSETAEGV SKLEGTVEMT SDSLRDNEVV PSEKEYTHAY DLYIPQIDPS PEVESVEHVN 300 ASVDTVENKV DTTDGIHYSN SGGLTESSNW EGEGNANVHV LSVPDDTHVV ENPEAMLEDD 360 LDGNGKDEKC DLSADHSSKG SAEENSVENP AEIEINPAAN LHENGDAGDY EKGIFETCNI 420 IGDSGYHETE NFKLAGDDNS KESTENFFAK DPVSNLESAS RLSELQVNPV SSSHEVGDAG 480 DYEKDKTERF DIIGDDGDHE KAEKDVLTGD DYRKVSTEKI VAENPITSLE SASSLSELQA 540 NLATNLNDDD PGDHDGGEIE KSIISGNESR EGPVEKNLLV KPTLNLDSAI DLVESKAVAE 600 DAVDGSMLKL VDTKHKPLNS SSNSSGVGLN IVSDHGPDAE STQKSSEGCG MKELGLSALD 660 AESSVLSFTA EDNGSREFRG VSSGLSSQSF QEESDKNFVR QQPSSSALDV VDSNSQTDSL 720 EGNWGSVSVL SIQSDAQAIP PTDSQTSVEE QKSKAASERQ YPEKSDMFEA PSFMTLVEPR 780 GVNDQKATAA EIHRAHNLEL PKPAPLQAGW FPSISHVVNE SPGRKKNEEI IAKVTNWSTG 840 KQHTPLKNLL GEAYLENKAK SPTQKESQTP APQKDDKAVK VKDGGPGATT VNSILGPESP 900 TGQASKKENA KEWNSPARYP SDIKSEKKKV KGRPYWAQFV CCSSVH

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MDSQDLARTH SSGLDSHGVH VCHKCGWPFP NAHPSARHRR AHKRICGTID GYKLAGSEKN  60
THVNDSDDEH SDEERKTPNL VSVRSEDVVF SDAVAEFSDS ASGAGTGEGL ENVRESEINL  120
ERVAKNGLNV IQSLNDGEIT ENTTNQLGAQ ELQGSLSTSN IISMTSSESA LQDDRNHSED  180
DVHPIQFEVL ADASEDSKKT HATDSVIESS LLSAPQEDKI DEIATSNLDR DLPYTVISPN  240
KVVSETAEGV SKLEGTVEMT SDSLRDNEVV PSEKEYTHAY DLYIPQIDPS PEVESVEHVN  300
ASVDTVENKV DTTDGIHYSN SGGLTESSNW EGEGNANVHV LSVPDDTHVV ENPEAMLEDD  360
LDGNGKDEKC DLSADHSSKG SAEENSVENP AEIEINPAAN LHENGDAGDY EKGIFETCNI  420
IGDSGYHETE NFKLAGDDNS KESTENFFAK DPVSNLESAS RLSELQVNPV SSSHEVGDAG  480
DYEKDKTERF DIIGDDGDHE KAEKDVLTGD DYRKVSTEKI VAENPITSLE SASSLSELQA  540
NLATNLNDDD PGDHDGGEIE KSIISGNESR EGPVEKNLLV KPTLNLDSAI DLVESKAVAE  600
DAVDGSMLKL VDTKHKPLNS SSNSSGVGLN IVSDHGPDAE STQKSSEGCG MKELGLSALD  660
AESSVLSFTA EDNGSREFRG VSSGLSSQSF QEESDKNFVR QQPSSSALDV VDSNSQTDSL  720
EGNWGSVSVL SIQSDAQAIP PTDSQTSVEE QKSKAASERQ YPEKSDMFEA PSFMTLVEPR  780
GVNDQKATAA EIHRAHNLEL PKPAPLQAGW FPSISHVVNE SPGRKKNEEI IAKVTNWSTG  840
KQHTPLKNLL GEAYLENKAK SPTQKESQTP APQKDDKAVK VKDGGPGATT VNSILGPESP  900
TGQASKKENA KEWNSPARYP SDIKSEKKKV KGRPYWAQFV CCSSVH