PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003201.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 217aa    MW: 24043.1 Da    PI: 10.4924
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003201.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.41.5e-3050105258
                  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                 p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh hAlrRpRg+gGrF
  Pav_sc0003201.1_g090.1.mk  50 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-ATLRKPYMHESRHLHALRRPRGCGGRF 105
                                69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MANQQRDGQK SQAAISLQSS PQKYRAHFEL GFSQPMGRIM LPLNLTADEG PIYVNAKQYH  60
GIIRRRQSRA KAVMENRAAT LRKPYMHESR HLHALRRPRG CGGRFLNTKT MNIGKNETEG  120
TQVGDGQLFR HSGSHSSELL QSESGTLNSS KETNGSSSNI SGSEVTSVYS RRDLDRFSIN  180
HLGPSVHSLS DMMDSVRGMV IPTKWVAAGD NCCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-49NF-YA family protein