PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003201.1_g130.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 355aa MW: 39626.9 Da PI: 8.5496

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003201.1_g130.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.4	7.5e-13	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+ tf kRr+ +lKK EL +LCd++ ++i+++++ Pav_sc0003201.1_g130.1.mk 11 IVNDAARKATFRKRRANLLKKLRELTILCDVNGLIIVYGPD 51 779999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MTRRKVKLAW IVNDAARKAT FRKRRANLLK KLRELTILCD VNGLIIVYGP DSDEPVVWPE 60 RPVIQELLAR FLSIPEFERW KKMTNQETYL KDSAAKIQEQ IRKIQKKNNE MEMNYIMHQI 120 LQNGKPLDAF HARELTDLVF FMKDKMKEIE KRIETKEMDP NVPLCAPPHN DEWNATESLF 180 NYLHKEKTKQ MENIIGASSS VRSGMGLLEY TYFGSSVNPA NGIGFPSVNF EGNYSYGGSD 240 LGLPKQIHNI AGSSSSVRHY GTDLGMPHVN YGGSSTGGSE MRYDMLPHYY GDNIVGNTGW 300 GTRGTNAGYG DRLGHLPQQL SIEGDKGSGL GLPAGLFGGN NGGSDAGLPY DVSKT

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MTRRKVKLAW IVNDAARKAT FRKRRANLLK KLRELTILCD VNGLIIVYGP DSDEPVVWPE  60
RPVIQELLAR FLSIPEFERW KKMTNQETYL KDSAAKIQEQ IRKIQKKNNE MEMNYIMHQI  120
LQNGKPLDAF HARELTDLVF FMKDKMKEIE KRIETKEMDP NVPLCAPPHN DEWNATESLF  180
NYLHKEKTKQ MENIIGASSS VRSGMGLLEY TYFGSSVNPA NGIGFPSVNF EGNYSYGGSD  240
LGLPKQIHNI AGSSSSVRHY GTDLGMPHVN YGGSSTGGSE MRYDMLPHYY GDNIVGNTGW  300
GTRGTNAGYG DRLGHLPQQL SIEGDKGSGL GLPAGLFGGN NGGSDAGLPY DVSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RRKVKLAWIVNDAARKATFRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-20	M-type_MADS family protein