PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003261.1_g240.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 296aa    MW: 32864.8 Da    PI: 7.8076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003261.1_g240.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-135821898
                               --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                               +p  fa++h  +  +++     l+ ++g +W+vk++y+k+  r  ++ GW +Fv++n+L++ D++vF l+++ + ++ v +fr
  Pav_sc0003261.1_g240.1.mk  5 MPSGFAKRHlvE-HPAG--NAFLRVSDGGTWSVKFKYEKSIAR--FQYGWLGFVRDNNLEVDDVCVFILNEDIKLSFDVVFFR 82
                               589999999743.3344..69999***********77777655..99*********************988766666666666 PP
2B352.21.1e-16137219594
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ++++ +   l+lp kf +   ++k +s +++l+ ++gr+W+v l  +k++  + ++ GW + v++n+Lk+gD++vF l++++
  Pav_sc0003261.1_g240.1.mk 137 M-RPSYINGWSLWLPSKFYKLSPSIK-RSCEVILQVSNGRTWSVGL--NKGR--TKFRCGWMDVVRDNHLKVGDVCVFVLISSK 214
                                4.4455555569*******7776665.667****************..6666..559***********************9854 PP

                                EE..EE CS
                         B3  89 efelvv 94 
                                + ++++
  Pav_sc0003261.1_g240.1.mk 215 S-TPLF 219
                                4.4544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MNKPMPSGFA KRHLVEHPAG NAFLRVSDGG TWSVKFKYEK SIARFQYGWL GFVRDNNLEV  60
DDVCVFILNE DIKLSFDVVF FRTTEEAVNC PLSPGRHDFP TKKGGGGTSS NRTGKATARD  120
GANAFRSQNP SSFIVSMRPS YINGWSLWLP SKFYKLSPSI KRSCEVILQV SNGRTWSVGL  180
NKGRTKFRCG WMDVVRDNHL KVGDVCVFVL ISSKSTPLFD LVIFRSREGA KCTSDGEQIV  240
PTKEETDNEG GDSSDDSSND SSDDSGDESS DDSGDDSVEI MDKFPPPRKT RVVKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-12B3 family protein