PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003562.1_g440.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 342aa MW: 37313.1 Da PI: 9.8758

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003562.1_g440.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	274	331	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h Pav_sc0003562.1_g440.1.mk 274 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 331 9**********************9888**************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MAVELMKFPK MEDRKAIQEA ASQGLESMEQ LIRFLSHQQQ TNQSSRLDCT DITDHTVSKF 60 KKVISLLNRT GHARFRRGPV QPDQPVQFPS SSSHPSYSQT LSLAPALYPR PSPAPAPVTT 120 PAIVPPAPIE SSYVQSQPHG MTLDFTRPNV FASNPKSTEI EFAKESFSVS SSSSFMSSAI 180 TGDGSVSNGK QGSSIFLAPA PAVSGAKPPL STAPFKKRCH EHDHHSDDAS CKYSGSGSAS 240 GSGKCHCSKR RKNRVKKTIR VPAISSKIAD IPPDEYSWRK YGQKPIKGSP YPRGYYKCST 300 VRGCPARKHV ERAPDDPAML IVTYEGEHRH APENVGSVFE ST

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MAVELMKFPK MEDRKAIQEA ASQGLESMEQ LIRFLSHQQQ TNQSSRLDCT DITDHTVSKF  60
KKVISLLNRT GHARFRRGPV QPDQPVQFPS SSSHPSYSQT LSLAPALYPR PSPAPAPVTT  120
PAIVPPAPIE SSYVQSQPHG MTLDFTRPNV FASNPKSTEI EFAKESFSVS SSSSFMSSAI  180
TGDGSVSNGK QGSSIFLAPA PAVSGAKPPL STAPFKKRCH EHDHHSDDAS CKYSGSGSAS  240
GSGKCHCSKR RKNRVKKTIR VPAISSKIAD IPPDEYSWRK YGQKPIKGSP YPRGYYKCST  300
VRGCPARKHV ERAPDDPAML IVTYEGEHRH APENVGSVFE ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.2	1e-111	WRKY family protein