PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003570.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 226aa    MW: 25720.6 Da    PI: 6.7746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003570.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07168206952
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y++
  Pav_sc0003570.1_g050.1.mk 168 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVN 206
                                699*****************87.....8**************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MEINIDYTSK RAINSSGVDL DDDHASMEDP ILHQISSYEY SSLWPNLPLP HHPLHQIPSS  60
STAPPPPPPP NHHHHHHHQS IADHHDHHGH QMLLLAGGNN NNIFVELNEH EEDEEAGDGG  120
GGEEELGAMK EMMYKIAAMQ PVDIDPATIR RPKRRNVRIS DDPQSVAARH RRERISEKIR  180
ILQRLVPGGT KMDTASMLDE AIRYVNTNTQ QSSCRSRRRH HHHLLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-39bHLH family protein