PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003613.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 261aa    MW: 29942.5 Da    PI: 8.1863
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003613.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.3e-2184174190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                                +fY++YA  +GFs+r+s+ ++s + g ++ r++vCskeg+r+++ ++ ++  r++r+etr +C+a++ vk    ++ + vtk++
  Pav_sc0003613.1_g010.1.br  84 RFYCNYALAIGFSIRRSRLRRS-EGGVVMGRQWVCSKEGSRSKKWTNrDNMVRTPRKETRENCHATFAVKYCPkRDAYIVTKFV 166
                                5********************9.8999***************9988846677889*****************999********* PP

                       FAR1  83 leHnHela 90 
                                +eH+H la
  Pav_sc0003613.1_g010.1.br 167 TEHSHRLA 174
                                *****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDAEASKTNG IQGQNSVPNS EGYFAEAESL EETENAPSLQ ILDSRTEEIT EKSGQFEYDG  60
LNFQNMSIAD LAEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE  120
GSRSKKWTNR DNMVRTPRKE TRENCHATFA VKYCPKRDAY IVTKFVTEHS HRLANSREVP  180
FLRSHRCVTE SNIAQSMSMR KASIKTNRTY DYMVDQAGGY MKVGFTSKDL YNRIDFERRQ  240
VVLDGDAEAA ISYMNAWTLG K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1 family protein