PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003619.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21943.5 Da    PI: 4.5253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003619.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF245e-0828671250
                               HHHHHHHHHHH.HHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF 12 tfskRrngilK.KAeELSvLCdaevaviifsstgklyeys 50
                               t    r  ilK KA  LS LCd+ v +i ++ +g++  ++
  Pav_sc0003619.1_g010.1.br 28 TVMAKRGSILKnKAGQLSKLCDIAVYMIAVGADGEINAWP 67
                               555566778887*************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MAIPKSNPRV SASMKMKRVF DAMKPQKTVM AKRGSILKNK AGQLSKLCDI AVYMIAVGAD  60
GEINAWPENQ QDLKSVLLKY KNLKMDNCLG AKLESLNERI GAVTMKMMMR DDGKCSFMDF  120
LVLGNDDHND IGLMEDYLQL YDLELPEEPQ EQLQPQPPSV PSVEISDDDM KLLLSDCEIG  180
LMEDDMQFCL HPNPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-08M-type_MADS family protein