PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003766.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26901.7 Da    PI: 9.6559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003766.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85.2e-221962245
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               +ie  sn qvtfskRr gi+KKA+E+++LC++e+a+i+fs+ +k
  Pav_sc0003766.1_g040.1.mk 19 KIEKRSNLQVTFSKRRSGIFKKASEMCTLCGVEIAIIVFSPANK 62
                               699**************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MVMKIKKPSQ GRQKIAIAKI EKRSNLQVTF SKRRSGIFKK ASEMCTLCGV EIAIIVFSPA  60
NKPFSFGHPE VDSIVDRFIA RNPNPNPLGL AGSTDTTQQL AEAHRNSSVH ELNMQLTQIV  120
NRLEAEKKHG EALDKMSKAS QNQCWWEMPV DELGLHELQI LKASVEEIKR NVNKQANRIL  180
MESRNPSAAA NYSSSPLSMM NNIGGLVQRD IDDHYRFESK NPTDQIAPAY HFGYAGHGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-56M-type_MADS family protein