PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0004290.1_g270.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 368aa    MW: 40252.2 Da    PI: 7.6474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0004290.1_g270.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07133154426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                + C++f++ G+C  Gd+C FaHg
  Pav_sc0004290.1_g270.1.mk 133 AACPDFRK-GHCAKGDSCEFAHG 154
                                78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MMLGEPTRLH PTLQVPQWDP FDDLTPTSPF SAPNPTVNVN GNAGNGDYSP LSPMFLDSLA  60
ALHRYLPSNE SDSLGDDPDM AMNPISCDQF RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA  120
RRRDPRKYHY SGAACPDFRK GHCAKGDSCE FAHGVFECWL HPARYRTQPC KDGLGCNRRV  180
CFFAHTPEQL RVLPGQSPRT HGSGAVDSYS YGSSPTSILI SPPISPPSDS PPMSPNSPQL  240
GCNSVSELVA SMRNFKLAKM KMSAQPAWGP QMGSGFGSSP RGSALRPAFC SLPSTPTRTS  300
GRAGPGAVDL WDHSCEEEPA MERVESGRDL RARMYARLSK ENSMGRVGRA DSGMPAPDVG  360
WVSELVSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-118C3H family protein