PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0004416.1_g110.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25399.1 Da    PI: 7.139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0004416.1_g110.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-192378156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +++ +++t++q++e+e+lF++++ p+ ++r+eL+++lgL+  qVk WFqN+R  +k
  Pav_sc0004416.1_g110.1.br 23 KKTHRRHTQHQIQEMEALFKECPCPKPKQRKELSRELGLEPFQVKWWFQNKRNHMK 78
                               678889**********************************************9887 PP
2START37.17.5e-13128204269
                                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                                +  +a++el+++a+ +ep+W++s     +  n+de++++f++        ++ ea+r+s+vv m++ +lve+l+d+ 
  Pav_sc0004416.1_g110.1.br 128 IVVAAMEELIRMAQMGEPLWMTSLdgntTVVNEDEYIRTFPRVAPkpnnhFKCEASRESAVVVMNHSNLVEILMDVV 204
                                56799*******************88888889********9977799999************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MINTKFGSNN PEGGFGDQDP RPKKTHRRHT QHQIQEMEAL FKECPCPKPK QRKELSRELG  60
LEPFQVKWWF QNKRNHMKTQ LELHENTQLR NENEKLRADN MRYREALGSA SCPNCGGPTT  120
IREMIIEIVV AAMEELIRMA QMGEPLWMTS LDGNTTVVNE DEYIRTFPRV APKPNNHFKC  180
EASRESAVVV MNHSNLVEIL MDVVTLFTCV INIEQICYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.41e-54HD-ZIP family protein