PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0004890.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 256aa    MW: 28141.3 Da    PI: 4.57
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0004890.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86.1e-093262448
                               HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                               W++Ia++++ gRt++++k++w+++l
  Pav_sc0004890.1_g010.1.mk  3 WSAIASHLP-GRTDNEIKNFWNTHL 26
                               *********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVWSAIASHL PGRTDNEIKN FWNTHLKKKL IQMGFDPMTH RPRTDIFSSL PHLLALVNLK  60
ELLDHGGHPS WDEQAVRLQA EAAQMARLQY LQCLLQPPTA NNSFGAGSPS NLNDITDMET  120
INLLSSLCSY QLDQNPPQYP GANFQPVQDH NSIPFSHLPD LQTYQTPSLN NKDMVNQAED  180
QLAVVLSQGQ NSPNNPWNIP SSSNTTPSPT SMAPPVAETS INNTMGDACS TSSFGGVANS  240
AWSELLLEDS FFNEIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-43MYB family protein