PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0004917.1_g020.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 181aa MW: 20605.9 Da PI: 9.8152

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0004917.1_g020.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	9.8e-23	31	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 k+Yn YAk++GF vr ++k+s+ +ge+++++fvCsk+g++e++ + ++r+r rtgC akl v k + ++k+ v k+++ Pav_sc0004917.1_g020.1.br 31 KMYNVYAKKAGFGVRCYTTKTSRVTGEVVRKEFVCSKQGHTESKVGR---KKRRRGCVRTGCMAKLAVLKPYeKNKYTVVKFKE 111 68*************************************998766...999999*******999988******* PP FAR1 84 eHnHela 90 eHnHe++ Pav_sc0004917.1_g020.1.br 112 EHNHEMT 118 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MESELEVTPE VSVEFKPQVG LEFDSLEDVL KMYNVYAKKA GFGVRCYTTK TSRVTGEVVR 60 KEFVCSKQGH TESKVGRKKR RRGCVRTGCM AKLAVLKPYE KNKYTVVKFK EEHNHEMTAY 120 DKVHLLRSHR KLTDSTKVYN AHLSEVNISV HQQVSLLEVL AGGLENIGFK LTSHRSICLV 180 V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	103	RKKRRRGCVRTGCMAKLAVLKPYEKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-17	FAR1 family protein