PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0004999.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 237aa MW: 27438.9 Da PI: 8.9993

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0004999.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi +H Pav_sc0004999.1_g070.1.mk 52 YYCEYCGICRSKKSLITSHILSH 74 89*******************96 PP
2	zf-C2H2	20.9	9.4e-07	97	118	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pav_sc0004999.1_g070.1.mk 97 TCQECGVTFRKPAHLKQHMQSH 118 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MTKKKKKKPV GLKVQTPLLV SLVGETFRVG ALAMDKGQAE MEGPIFRDIR RYYCEYCGIC 60 RSKKSLITSH ILSHHKDEME MSNVDEDREV EQKKSNTCQE CGVTFRKPAH LKQHMQSHSL 120 EVLFIVHIQN KLRPLNKKRT DKLSSSLRFL ELSLQFKLDT VEAFCSEPGC MKHFTNEQCL 180 QAHIHSCHQH TTCEICGTKQ LRNNLKRHLL THEDKHSIER IKCDYKGCLH TFTTVSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	5e-32	C2H2 family protein