PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0005132.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 291aa    MW: 32374.7 Da    PI: 4.7528
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0005132.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-0958101346
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 
                                k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV +
  Pav_sc0005132.1_g040.1.mk  58 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAI 101
                                56689*************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MKRLGSSDSL GAMISICPST AEEHSPRNNH VYRRDFQSML DGLDEEGCVE EGGHVSEKKR  60
RLSVEQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA IKQLKSKLQE ENTESNNLSV  120
KEEQMVAKDQ SNYKVVDHEQ SKSPPPPPPG SSVPATESKE LNFESFNNTN NGAVGLEAVS  180
LFPDFKDGSS DSDSSAILNE DNSPNLTISS SGILQNHQLM KSPASTSLKF NCSSSSSPSS  240
SSMNCFQFQK TYHPQFVKIE EHNFFSSEEA CSFFSDEQAP TLQWCCPDQW N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15887KKRRLSVEQVKALEKNFEVENKLEPERKVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.14e-35HD-ZIP family protein