PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0005443.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 336aa MW: 36861.2 Da PI: 8.5683

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0005443.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.8	4e-23	76	120	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+ Pav_sc0005443.1_g060.1.mk 76 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 120 79***************************************9986 PP
2	QLQ	50.4	6.9e-18	14	48	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT aQ++++++Q+l++KyL a++PvPp+Ll +i+ Pav_sc0005443.1_g060.1.mk 14 PFTVAQWAEMEHQALIFKYLKAGLPVPPDLLGPIR 48 9******************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MSGSSVGNGG LAPPFTVAQW AEMEHQALIF KYLKAGLPVP PDLLGPIRTS FNLISSNFLR 60 HHPTLGYTSY CGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVES 120 QTTSQSSSTV TSDSVIGSSS HSGSFQNMPL HSMVNSGGLC FGSNVSQLKM EPIPYGIGNS 180 GNRGCNGAEE HNFMSEPSGS VRCLGMDSTV DSPWHLMVPR VSLKSEPKNC SLLLNNSSQL 240 ETLQHTEPLT VDAAITKQQQ HQYVGGQFGF PGSLKHEQNS LQPFFDEWPK SRDLGFHLSD 300 HRSTNTLTAT QLSTSNAMAP SKFFARSADS PTDAYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-41	GRF family protein