PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0006080.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 172aa    MW: 19166.4 Da    PI: 4.8894
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0006080.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB156.25.5e-49398297
                      NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                                eqd +lPianv+rimk++lP++akisk+ak+t+qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++   yl
  Pav_sc0006080.1_g050.1.mk  3 DEQDGLLPIANVGRIMKQILPQRAKISKEAKQTMQECATEFLSFVTAEASDKCHKENRKTVNGDDICWALSALGFDNYAQATIRYL 88
                               69************************************************************************************ PP

                      NF-YB 88 kkyrelegek 97
                               +kyre+e++k
  Pav_sc0006080.1_g050.1.mk 89 HKYREAERDK 98
                               ********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MVDEQDGLLP IANVGRIMKQ ILPQRAKISK EAKQTMQECA TEFLSFVTAE ASDKCHKENR  60
KTVNGDDICW ALSALGFDNY AQATIRYLHK YREAERDKAA ANANNNNQNK AADIIIMSSG  120
QEMNDVGDRP ASIYMASQQG LQVGEQTQTP DLEFRMLEKG DGTKPSVDQE HN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-54NF-YB family protein