PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006080.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 518aa MW: 56729.1 Da PI: 9.1427

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006080.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pav_sc0006080.1_g080.1.mk 93 FVCEICKKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	12.1	0.00061	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pav_sc0006080.1_g080.1.mk 169 WKCDKCSKKYAVQSDWKAHSKTC 191 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MSIITGSAAG SLSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP 60 PQPKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK 120 LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNNINMG 240 APILQGQVSN SDLISPSSIN NSNKTTNNPS TRSSTTSDQF NHNFDTKIPL SLVPQQPLPM 300 SSKPLNMLPR SLNNNNNTSS SSPSPLLFEL SRGHGLIPSS SGHLSATELL QKAAQMGATM 360 SSTSPSPSGT TITSMAPSTY GTTTTGGYNV NPFMQHRDHH NVNVGPQLEN SFFGANNYAQ 420 MGMYGGLLFD PHQNNGLLKN MEQDNNGNSS KLGLRGTNVS GGDTLTVDFL GIGGSTNVNR 480 PEDFHGQQKQ QHDQQQQQQD QLGFGGIDDD HLRMQRFN

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MSIITGSAAG SLSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP  60
PQPKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNNINMG  240
APILQGQVSN SDLISPSSIN NSNKTTNNPS TRSSTTSDQF NHNFDTKIPL SLVPQQPLPM  300
SSKPLNMLPR SLNNNNNTSS SSPSPLLFEL SRGHGLIPSS SGHLSATELL QKAAQMGATM  360
SSTSPSPSGT TITSMAPSTY GTTTTGGYNV NPFMQHRDHH NVNVGPQLEN SFFGANNYAQ  420
MGMYGGLLFD PHQNNGLLKN MEQDNNGNSS KLGLRGTNVS GGDTLTVDFL GIGGSTNVNR  480
PEDFHGQQKQ QHDQQQQQQD QLGFGGIDDD HLRMQRFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	4e-96	C2H2 family protein