PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006956.1_g010.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 241aa MW: 26811.6 Da PI: 5.2288

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006956.1_g010.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.9	6e-37	7	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkCa++C++apyf+ e+ + +f ++h++FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++l Pav_sc0006956.1_g010.1.br 7 PCGACKFLRRKCARGCIFAPYFCYEEaATHFSAIHRFFGASNVSKLLADLPLSDRCEAAMTISYEAQARLQDPIYGCVSHIFAL 90 7*********************98689*************************************************** PP DUF260 84 qqqleqlkaelallk 98 +qq+ +l+a+la l Pav_sc0006956.1_g010.1.br 91 EQQVVNLQAHLAFLM 105 *******999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MAGSGSPCGA CKFLRRKCAR GCIFAPYFCY EEAATHFSAI HRFFGASNVS KLLADLPLSD 60 RCEAAMTISY EAQARLQDPI YGCVSHIFAL EQQVVNLQAH LAFLMDQAAQ SFVNGSAVAN 120 PNEKFYGKLP SHTDLEEAQS WFHELENSSN SMPQFNSTHI NNPGTTSYYE NGIMNSNNSV 180 NGSYEKSVNI PEENVSYGSF EEGTSHSMSS FGMQTNYNRQ WGFQDADELQ SVVFNYIHQH 240 S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-65	LBD family protein