PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0007253.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 318aa MW: 34705.2 Da PI: 7.2661

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0007253.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.8	4.9e-10	133	157	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Pav_sc0007253.1_g030.1.mk 133 GEKDCAHYMLTRTCKFGELCKFDHP 157 7889********************8 PP
2	zf-CCCH	37.7	3.5e-12	244	266	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Pav_sc0007253.1_g030.1.mk 244 IECDYYMKTGECRFGEQCKYHHP 266 68********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSSHLYGYGT AQSAAAAAAA TAGLSSLYTS RALTDPTLRY LSGSDPFASA TNHHSRSSSM 60 YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE 120 SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VASENADVFA 180 LPERPSEPPS INPPVGAISH PIVAPPAAGL NIGVINPAAS IYQTLAQPTV GGGQTVYPQR 240 FGQIECDYYM KTGECRFGEQ CKYHHPIDRS AVALSTTKPV QQQNVKLTLA GLPRREGCCY 300 LCVLPENWHM QVWCNLQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	6e-57	C3H family protein