PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0008590.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 349aa MW: 38750.8 Da PI: 5.6319

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0008590.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24	9.9e-08	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Pav_sc0008590.1_g030.1.mk 140 HYCEICGKGFKRDANLRMHMRAH 162 68*******************99 PP
2	zf-C2H2	10.7	0.0017	226	249	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + Pav_sc0008590.1_g030.1.mk 226 YSCNRCNkKSFSVVADLKSHLKHC 249 99*******************977 PP
3	zf-C2H2	13.3	0.00024	257	273	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ Pav_sc0008590.1_g030.1.mk 257 TCGTSFSRKSKLFGHMA 273 6**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MSFTGQPFNI PSACSVAPTA EDPDPEVPLR NLSMVRTRMD SLQCFLTESI NANALISKDQ 60 MDMVSAGIAS AIREIISNGT ALLACSQNLG PASDPTRTPA ANNEAATEVK KEEENDFQND 120 DAEGEIVEVD AMELLAEHIH YCEICGKGFK RDANLRMHMR AHGNRFKTPE ALAKPDKNPA 180 EPSRKTRFSC PYIGCNRNKG HVKFRALKSV ICVKNHFKRS HCPKMYSCNR CNKKSFSVVA 240 DLKSHLKHCG EARWRCTCGT SFSRKSKLFG HMALFEGHMP AVEDEKSGVK AATAMDQDED 300 EEEEVEENTT SFKGREMGSN FLEDIEFSEL LGGFGSIDGY FLEDMLVDL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MSFTGQPFNI PSACSVAPTA EDPDPEVPLR NLSMVRTRMD SLQCFLTESI NANALISKDQ  60
MDMVSAGIAS AIREIISNGT ALLACSQNLG PASDPTRTPA ANNEAATEVK KEEENDFQND  120
DAEGEIVEVD AMELLAEHIH YCEICGKGFK RDANLRMHMR AHGNRFKTPE ALAKPDKNPA  180
EPSRKTRFSC PYIGCNRNKG HVKFRALKSV ICVKNHFKRS HCPKMYSCNR CNKKSFSVVA  240
DLKSHLKHCG EARWRCTCGT SFSRKSKLFG HMALFEGHMP AVEDEKSGVK AATAMDQDED  300
EEEEVEENTT SFKGREMGSN FLEDIEFSEL LGGFGSIDGY FLEDMLVDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	8e-78	C2H2 family protein