PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0009842.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 218aa    MW: 24369 Da    PI: 6.1658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0009842.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18106156255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t+e+A  a+++a+ k++g
  Pav_sc0009842.1_g020.1.mk 106 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKIRG 156
                                7********.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MYGETTLELE SNLALLESIR HHLLDDLEPQ ATSFSGNNVS VTFPFFVTEY WWESSLEAEG  60
VDNTIQDMLE ALHDVNYVGC VVSDDEVQLK EQVAESAVHA RRGERHYRGV RRRPWGKFAA  120
EIRDPAKNGA RVWLGTYETP EDAGLAYDRA AFKIRGCKAK LNFPHLIGSS NVEPVRVTPK  180
RRRSPDQCSS SSSSAYTSDN GSSKPKRREA GVDNHLAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180206KRRRSPDQCSSSSSSAYTSDNGSSKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-38ERF family protein