PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0010169.1_g050.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32822.1 Da    PI: 5.4082
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0010169.1_g050.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.47.4e-1151802756
                               HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
                                ++r+eL+++l L+  qVk+WFqN+R+++k
  Pav_sc0010169.1_g050.1.br 51 DKQRKELSRELALEPLQVKFWFQNKRTQMK 80
                               689************************999 PP
2START92.49.2e-301302882164
                                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                                +  +a++el+++a+ +ep+W++s     +  n+de++++f++        ++ ea+r+s+vv+m++ +lv+  +d++ qW++ +
  Pav_sc0010169.1_g050.1.br 130 IVVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpnnhFKCEASRESAVVIMNHINLVA--MDVN-QWSTVF 210
                                56789*******************88777789********9977799999*****************9996..999*.****** PP

                                S....EEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                      START  77 a....kaetlevissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                                     +a+tlev+          ++    splvp  ++++vRy++q+ +g+w++v+ S+d  ++++       ++++pSg+li+
  Pav_sc0010169.1_g050.1.br 211 SgivsRAMTLEVLI---------SS-T--SPLVPtHESYYVRYCKQHADGTWAVVEDSLDTLRPNTA---PRSCQRRPSGCLIQ 279
                                *5555555555543.........32.3..489999******************************94...455789******** PP

                                EECTCEEEE CS
                      START 156 pksnghskv 164
                                +++ng+skv
  Pav_sc0010169.1_g050.1.br 280 EMPNGYSKV 288
                                ********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MFQPNLMEVG HLHPLDMAPN KSVSDIAQIR DDDFDSATKS DSDNPEGGSD DKQRKELSRE  60
LALEPLQVKF WFQNKRTQMK TQHELHENTQ LRNENEKLRA DNMRYREALG SASCPNCGGP  120
TTIREMIIEI VVAAMEELIR MAQMGEPLWM TSLDGNTTVF NEDEYIRTFP RVAPKPNNHF  180
KCEASRESAV VIMNHINLVA MDVNQWSTVF SGIVSRAMTL EVLISSTSPL VPTHESYYVR  240
YCKQHADGTW AVVEDSLDTL RPNTAPRSCQ RRPSGCLIQE MPNGYSKVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.13e-90HD-ZIP family protein