PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0010972.1_g010.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 101aa MW: 11660.2 Da PI: 10.2089

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0010972.1_g010.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	64	3.7e-20	13	72	1	60
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss 60 aCa+Ck +rrkC + +apyfp ++ ++f+n+hk+FG+sn++k+++ + +++r++a++s Pav_sc0010972.1_g010.1.br 13 ACASCKQQRRKCDETWEMAPYFPPSRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAKS 72 7*******************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence
MENRDQGAAQ NHACASCKQQ RRKCDETWEM APYFPPSRYS EFQNAHKIFG VSNIQKIMAM 60 AAPDQRQAAA KSSSISTRRY TSRLQQVGYF ISFFRISLYP K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	8e-15	LBD family protein