PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0011874.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 67aa    MW: 7648.93 Da    PI: 9.0825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0011874.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77e-12225124
                               --S---SGGGGTS--TTTTT-SS- CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFa 24
                               +kte C++++++G+C+yG  C+Fa
  Pav_sc0011874.1_g010.1.mk  2 PKTEMCNTWMAGGICPYGRACQFA 25
                               7**********************8 PP
2zf-CCCH18.14.7e-064065126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               ykt++C +f  +G C yG+rC+F H+
  Pav_sc0011874.1_g010.1.mk 40 YKTKPCFYFTSGGGCMYGSRCQFRHD 65
                               9**********************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    
MPKTEMCNTW MAGGICPYGR ACQFAYGPLE LRTVIRHPLY KTKPCFYFTS GGGCMYGSRC  60
QFRHDRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-25C3H family protein