PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0012272.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 163aa    MW: 19299.1 Da    PI: 9.922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0012272.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.68.1e-39171371127
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lp+GfrF+Ptdeelv++yLk+k+eg++ e   +i+e+di+k+ePwdLp k  +k+++++w+fF k +k        +ratk+g+
  Pav_sc0012272.1_g010.1.br  17 LPVGFRFRPTDEELVNYYLKNKLEGSHAEN--IIDEIDILKFEPWDLPdKsLIKSDDENWFFFYKYKK-------GSRATKEGF 91 
                                79***********************99555..8**************964477888899999987644.......579999*** PP

                        NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                Wk t kd+ ++++ +++++  k++L+fy gr +k++kt+Wv+hey 
  Pav_sc0012272.1_g010.1.br  92 WKITSKDRVIKARdNRTVIAKKRILTFYIGRVRKSTKTNWVIHEYY 137
                                ***********995566688899**********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MARLSRAAEE EEGDLSLPVG FRFRPTDEEL VNYYLKNKLE GSHAENIIDE IDILKFEPWD  60
LPDKSLIKSD DENWFFFYKY KKGSRATKEG FWKITSKDRV IKARDNRTVI AKKRILTFYI  120
GRVRKSTKTN WVIHEYYIPD DAHPNAKQLK GVPNLKSMRW NVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-42NAC family protein