PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g003210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 217aa    MW: 24223.4 Da    PI: 5.9763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g003210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.32.7e-173432059
                      S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                        r+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Pd.00g003210.m01  3 KVRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 43
                      679******998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MEKVRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSTRSQPS  60
KNGAGSKTSS NSSHQPHQKP ASPTKEEQNE TMNDNNHVSP VITAGSASTV KEEFEDIEKQ  120
LELDHHQFNG DHQAGFPYRP SMPDDQSNQS HHNEDFFADL GEIEADPLNL LFSQCFTADE  180
QQKGSKAAAL DPFNLFDCLK TLSFWFELNF ICGGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-38WRKY family protein