PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g003300.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 623aa MW: 70128 Da PI: 8.9066

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g003300.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.2	2.3e-12	454	478	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Pd.00g003300.m01 454 CSGCRSILLYPRGATNVCCALCNII 478 **********************975 PP
2	zf-LSD1	41.3	2.6e-13	493	517	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pd.00g003300.m01 493 CGGCRTLLMHTRGATSVRCSCCHTV 517 ************************9 PP
3	zf-LSD1	45.1	1.6e-14	531	555	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Pd.00g003300.m01 531 CGNCRTTLMYPYGAPSVKCAVCHYV 555 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MGAFSNPIAS NTAPVARGVV KFEFFEQNQM GTQFTRWIMK HPHQHFLAVR LKTTSSQYVA 60 SRARDPTFEK LMDKYKNLLK VIAVQDLILA NPTNPAVSID FLSRLSQKLH LNRGAVSFLR 120 KYPHIFHIYH DPMKCQTFCR LTDAAIQISK EEAEVINASL PLVVDRLVRL LSMSRSRMLP 180 LRAILKVGRE LGLPDDFEDS VISRNSHLFQ LCDAHEPNTH NLKLFDVIPD KFTAAVENWR 240 VEEYCKEGCN VDRAEIQFSF KHGYPPGMRL RKNFRAKVKE WQRLPYVGPY DEVSEKKRSS 300 KAGMMAVEKR AVATVHEFLN LTVEKTVEVE KISHFRKWFG FDLNIRDLFL DHPGIFYLST 360 KGKRHTVFLR EAYERGCLIH PNPVYHARRK LLDLVVLGRH GLLTDELRSI ASNKEAESLG 420 QICEDTRTSS LVELWEDFRE PEFHEESMQS QLVCSGCRSI LLYPRGATNV CCALCNIITP 480 VPPPGTEMAQ LICGGCRTLL MHTRGATSVR CSCCHTVNLA PASSQVAHVN CGNCRTTLMY 540 PYGAPSVKCA VCHYVTNVGM TNMRVPIPVH RPNGTANSGM APSTSTAMPH SQSQTVVVEN 600 PMSVDESGKL VSNVVVGVTT GKK

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MGAFSNPIAS NTAPVARGVV KFEFFEQNQM GTQFTRWIMK HPHQHFLAVR LKTTSSQYVA  60
SRARDPTFEK LMDKYKNLLK VIAVQDLILA NPTNPAVSID FLSRLSQKLH LNRGAVSFLR  120
KYPHIFHIYH DPMKCQTFCR LTDAAIQISK EEAEVINASL PLVVDRLVRL LSMSRSRMLP  180
LRAILKVGRE LGLPDDFEDS VISRNSHLFQ LCDAHEPNTH NLKLFDVIPD KFTAAVENWR  240
VEEYCKEGCN VDRAEIQFSF KHGYPPGMRL RKNFRAKVKE WQRLPYVGPY DEVSEKKRSS  300
KAGMMAVEKR AVATVHEFLN LTVEKTVEVE KISHFRKWFG FDLNIRDLFL DHPGIFYLST  360
KGKRHTVFLR EAYERGCLIH PNPVYHARRK LLDLVVLGRH GLLTDELRSI ASNKEAESLG  420
QICEDTRTSS LVELWEDFRE PEFHEESMQS QLVCSGCRSI LLYPRGATNV CCALCNIITP  480
VPPPGTEMAQ LICGGCRTLL MHTRGATSVR CSCCHTVNLA PASSQVAHVN CGNCRTTLMY  540
PYGAPSVKCA VCHYVTNVGM TNMRVPIPVH RPNGTANSGM APSTSTAMPH SQSQTVVVEN  600
PMSVDESGKL VSNVVVGVTT GKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	5e-72	LSD family protein