PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g003900.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 244aa    MW: 27824.8 Da    PI: 9.793
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g003900.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81e-1622112279
          trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                       Wt  e++ Liea++ ++er  +++             ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+++ ++e+ s +
  Pd.00g003900.m01  22 WTVGETMILIEAKKMDDERRMKRSgdaagsetrsskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERREgREEAASYW 112
                       *************96655555432234444445444999****************************************996344444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE  60
LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGREEAAS YWKLEKSERK  120
DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGASVSG SNVPNPTIGY VVERPIISTS  180
VHQASLPPPV LQHHISVPPI AALPLLPPAP LAVQPPPTLP YSQPMPTKHF RVVRREKREG  240
TEIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-55Trihelix family protein