PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g004770.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 345aa    MW: 37213.9 Da    PI: 7.1983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g004770.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016154176123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C++ Fs++  L  H++ H
  Pd.00g004770.m01 154 FTCNFCKREFSTSQALGGHQNAH 176
                       89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MAEESRVERL SSTSEASNIS AASDGPPPTQ KDGLENLDQK LKMKLKEKIV IDDSDDDDDT  60
QQPPQQPLPP PAVKSSSSPS PSSRLRLDLK LCNDNPARGS GSTSRLELSL FNTSNPGSSN  120
PGSSNPVLRY SQPNETTDEN PHGSDDKRSQ PRVFTCNFCK REFSTSQALG GHQNAHKQER  180
ALAKRRQGGL ENMGGVLGHS PFSYYNPYSS FSSPSLYGSF NRSLGVRMDS MIHKPSYPWS  240
STPGFGRFGH GSGAWSSRAG GLLNFQSTID RLNLEGLHAS APNGILGLPG TSSAPRFDQE  300
IGAVRNFGDS SSNFGINRPF LGDLIRRELP TSDTDAAGLD LSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.17e-17C2H2 family protein