PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g006720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 277aa    MW: 31754.5 Da    PI: 7.7384
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g006720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.81.4e-4141031100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq++l++l+a+
  Pd.00g006720.m01   4 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKHLSELQAQ 96 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Pd.00g006720.m01  97 LAKTQAE 103
                       ***9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MDSPCAACKI LRRRCAEKCV LAPYFPPTEP LKFTIAHRVF GASNIIKLLQ ELPESHRADA  60
VSSMVYEANA RIRDPVYGCA GAICQLQKHL SELQAQLAKT QAELLNMQCQ QGNLIALISR  120
KLEKMSGAGK KVADVAFKAS RKIDWEGMAK LLVSDEARKE FASLRRAFDE VNTTLQTKFS  180
QEPEPIDWEY YRKGIGSRLV DMYKEAYDSV QVPKYLVDLK EAEEKSLKES ERLEKEIAEV  240
QELKKKISTM TADEYFEKHP ELKKKFDDEI RNDYWGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-66LBD family protein