PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g007770.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 373aa MW: 41355.9 Da PI: 9.6847

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g007770.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	8	28	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Pd.00g007770.m01 8 CEICGKGFQRDQNLQLHRRGH 28 *******************88 PP
2	zf-C2H2	13.2	0.00026	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pd.00g007770.m01 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTNK EPRKRVYVCP EKSCVHHHPS 60 RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR 120 DSFITHRAFC DALAEETARV NAASNMNNIP MGGNINYQYM GYSIGAVAGP NNNITAQQYF 180 SSIFKPMIST PNNIDDEASR GLSKMSATAL LQKAAQIGST TSSEAPLLGS FGMNNISKVC 240 GLYGVTSPDD HGHDHHAKRR SIQNCSAATT TTTNDDDDHQ ETIAAGGGGG QTRDFLGVGV 300 HAICHSSSPS INGCRKHCFE PFNKCRQHCF RKVLPRGFRS TMALKRVGDV HKVLFGKTWG 360 MCNPQGAVME VSP

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTNK EPRKRVYVCP EKSCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR  120
DSFITHRAFC DALAEETARV NAASNMNNIP MGGNINYQYM GYSIGAVAGP NNNITAQQYF  180
SSIFKPMIST PNNIDDEASR GLSKMSATAL LQKAAQIGST TSSEAPLLGS FGMNNISKVC  240
GLYGVTSPDD HGHDHHAKRR SIQNCSAATT TTTNDDDDHQ ETIAAGGGGG QTRDFLGVGV  300
HAICHSSSPS INGCRKHCFE PFNKCRQHCF RKVLPRGFRS TMALKRVGDV HKVLFGKTWG  360
MCNPQGAVME VSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-101	C2H2 family protein