PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g008890.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 196aa    MW: 23139.1 Da    PI: 8.3108
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g008890.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.52.9e-121453886
          trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                      m+ergf+r+p+qCk+kw+nl  ryk  ++++ +    s ++cp+f++l+
  Pd.00g008890.m01  1 MAERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFEELQ 45
                      89************************9999997....4667******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MAERGFNRTP EQCKCKWKNL LIRYKGKETS DPESGRECPF FEELQAVFTE RANNMQRLLL  60
ESETGSARSK KMGKRKLRPG RSSDEFSEDP DEEDEDDKKR KGERVIMPKA TNAASGTSSS  120
SIQDMLKAFF QQQQRMEMEW REMMERRAQE RRMFEQEWRQ KMEKVERESS ESSVCAAADA  180
PLQRIKEMNG MKFNYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17077KKMGKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-15Trihelix family protein