PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g012870.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26046.4 Da    PI: 7.6915
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g012870.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-19107161256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Pd.00g012870.m01 107 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 161
                       788899***********************************************98 PP
2HD-ZIP_I/II130.47e-42107196191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Pd.00g012870.m01 107 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 196
                       69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MPSLVPTSAS SPSGFLPQKP SWNETLISSD RNSNFETCRV GPRSFLRGID VNRLPSTGDC  60
EDEAGVSSPN STVSSVSGKR SEREANGEEL DIETRGISDE EDGETSRKKL RLSKDQSAIL  120
EESFKEHNTL NPKQKLALAK QLGLRPRQVE VWFQNRRART KLKQTEVDCE FLKRCCENLT  180
EENRRLQKEV QELRALKLSP QFYMQMTPPT TLTMCPSCLK ELIIKLNDLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112SRKKLRL
2156164RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-87HD-ZIP family protein