PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g013980.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 861aa    MW: 96400.1 Da    PI: 6.0291
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g013980.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23172273199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Pd.00g013980.m01 172 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 261
                       99*****************************9777666.49************************************************..88 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Pd.00g013980.m01 262 EKNQLLLGIRRA 273
                       99999****997 PP
2Auxin_resp105.94.5e-35282358883
        Auxin_resp   8 ksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       +sv +++YnPras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Pd.00g013980.m01 282 SSVLSIFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 358
                       67889*********************986599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    
MEGGVSSIWG SNLGLSRKKD LNFVEHDRER FKVDIDSYID MKLSTSGLGQ QDHEAAGGGA  60
EKKCLNSELW HACAGPLVSL PTPGTRVVYF PQGHSDQVAA TTNKQVDAHI PNYPSLPPQL  120
ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME LGIPSKQPTN YFCKTLTASD  180
TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV EWKFRHIFRG QPKRHLLTTG  240
WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM PSSVLSIFYN PRASPSEFVI  300
PLSKYIKAVF HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG  360
WDESTAGERQ PRVSLWEIEP LTTFPMYPSL FPLRLKRPWH PGASSMQDNR DDANSLMWLR  420
GGTGEQGLHS MNFQPVGMFP WMQQRLDSTL VGNDHNPQYQ AMLAAGLQNL GSGDQLRQHM  480
MHFQQPFQYV QQSSSHNPML QLQQQIQQSI PHNILQAQPQ VSLENLPQHL LQQQFNNQTE  540
EQVQQQQNTY HDALKVQTEQ LQQSQQMNVS SPSFPKTDFS DSNTKFSAST TPRQNMLGTL  600
CPEGSGNLLG SSRAGHSMPT EQLPQQSWAP KYAHAQVNAF ANSMSFPPFN EKDNAVEQEN  660
CNSDSQNPTL FGVNIESSGL LFPTTAPSFA TSSNDADMSM PLGDSGFQSS LYGCMQDSSE  720
LLHSAGQVDP PTPNCTFVKV YKSGSVGRSL DISRFSSYHE LREELGQMFG IEGKLEDRLR  780
SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDV HKMGDQAVEP FSPNTGQRLN  840
SGGGEAQDIV SGLPSLGSLE Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein