PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g014830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1548aa MW: 168452 Da PI: 4.7585

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g014830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	1524	1546	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ Cr f+++G+Ck G++C + H+ Pd.00g014830.m01 1524 QRVCR-FFESGHCKKGASCDYLHP 1546 68899.8889*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1548 aa Download sequence
MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEPQCM SESLPEPEFK PETEGFGLGV 60 EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVTEG HGTEDTEIVE ELNVAEGHGT 120 EDTEIVEELN VAEGHGTEDT EIVEELSVAE GQVTEETEVG AVDEKDERGL ETEKVLSEEG 180 VVAHSAKEAA EKSNVAEVAE ETVISWKDQA EEKTAEVEAE EAEAEAEKVQ AVGEQAEAEG 240 EKTEEEVEGD DEANVTDMVA ETDMVEESSK ATGKLLSKKK MEEDVCFICF DGGELVLCDR 300 RGCPKAYHPS CVNRDEAFFR AKGRWNCGWH LCSNCEKNAH YMCYTCTFSL CKGCTKDALF 360 LCVRGNKGFC ETCMKTVMLI EKNEQGNKDT NEVDFDDKTS WEYLFKDYWI DLKERLSLTV 420 DELAQAKNPW KGATGHKQES HDEPYDVNND EGSESDNSEN LDLANSKKRK AKKRLRTRGK 480 GKDSSSPATA TGSGGPSADD STGWGSKELL EFVMHMRNGD KSALSQFDVQ ALLLEYIKRN 540 KLRDPRRKSQ IICDIRLQNL FGKPRVGHFE MLKLLESHFL VKEDSQADDL QGSVVDTEGN 600 QLEADGNSDT PAKSSKDRRR KTRKKGDGRG PQSNTDDFAA IDIHNINLIY LKRNLVEDLL 660 DDLDNFGDKV AHSFVRIRIS GSGQKQDLYR LVQVIGTCKA AEPYKVGKRM TDILLEILNL 720 NKTEIISIDI ISNQDFTEDE CKRLRQSIKC GLINRLTVGD VQEKALALQA VRVKDWLETE 780 IVRLSHLRDR ASEKGRRKEL RECVEKLQLL KTPEERQRRL EETLEIHVDP NMDPSYESEE 840 DEGEGDDKKQ ESYIRPTGSG FGRKGREPIS PRRAGPSSND SWSGSRNFSS MNRELSRNMS 900 NKGFFNKAEN TSAAGEIVND SWGHGRDRET QQTNHWEKKQ NISSLETGVR STQSAVPSES 960 SPAGGSENSV AHLSTGVAQS AVNESEKIWH YKDPSGKVQG PFSMVQLRKW NHTGYFPANL 1020 RVWKNTEKEE DSILVTDALT GKFQKDPSFA DSSFPKAQMV HNSHLSPVHS GKSQGALFQR 1080 GTEGQAGGVS WGSQNEINSS SGRGTPQSVE VPKYSSDGWS TTNLPSPTPS QTPLGGARGQ 1140 AYESNWSPSP VHPGGSVLGG NGVLQPTAVV TPESALRASG NDRSSSLPGI NAAPKSENAT 1200 LLGSTTALRM HGQVTGSAPV LSNASMNQVA DVNNLVSNLQ NLVQSVTSRA PASDARGWGS 1260 GSVPKQEMTA SGPVPGSESQ PWGGAPSQRI EPNNAATVPA QHHTHGYWNN APSTNNAPSS 1320 MNTGNLAGNF PTSGFSGVPH SDPWRPPVPS NHTYIQPPAQ PQAPWGVGVP DNQSAVPRTG 1380 QENQNTSWVP MAGNPNVTWG GGPVPGNTNM NWGPPSQGPG WTAPSQGPVP GNAVTNWVPP 1440 GQGPPSVSAN PGWAPPGQGP TLGNANPGWS APNATQNGDR FSNQRDRGSH GDPGFGGGKP 1500 WNRQSSFGSG GGGGGSSRPP FRGQRVCRFF ESGHCKKGAS CDYLHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1548 aa Download sequence

MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEPQCM SESLPEPEFK PETEGFGLGV  60
EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVTEG HGTEDTEIVE ELNVAEGHGT  120
EDTEIVEELN VAEGHGTEDT EIVEELSVAE GQVTEETEVG AVDEKDERGL ETEKVLSEEG  180
VVAHSAKEAA EKSNVAEVAE ETVISWKDQA EEKTAEVEAE EAEAEAEKVQ AVGEQAEAEG  240
EKTEEEVEGD DEANVTDMVA ETDMVEESSK ATGKLLSKKK MEEDVCFICF DGGELVLCDR  300
RGCPKAYHPS CVNRDEAFFR AKGRWNCGWH LCSNCEKNAH YMCYTCTFSL CKGCTKDALF  360
LCVRGNKGFC ETCMKTVMLI EKNEQGNKDT NEVDFDDKTS WEYLFKDYWI DLKERLSLTV  420
DELAQAKNPW KGATGHKQES HDEPYDVNND EGSESDNSEN LDLANSKKRK AKKRLRTRGK  480
GKDSSSPATA TGSGGPSADD STGWGSKELL EFVMHMRNGD KSALSQFDVQ ALLLEYIKRN  540
KLRDPRRKSQ IICDIRLQNL FGKPRVGHFE MLKLLESHFL VKEDSQADDL QGSVVDTEGN  600
QLEADGNSDT PAKSSKDRRR KTRKKGDGRG PQSNTDDFAA IDIHNINLIY LKRNLVEDLL  660
DDLDNFGDKV AHSFVRIRIS GSGQKQDLYR LVQVIGTCKA AEPYKVGKRM TDILLEILNL  720
NKTEIISIDI ISNQDFTEDE CKRLRQSIKC GLINRLTVGD VQEKALALQA VRVKDWLETE  780
IVRLSHLRDR ASEKGRRKEL RECVEKLQLL KTPEERQRRL EETLEIHVDP NMDPSYESEE  840
DEGEGDDKKQ ESYIRPTGSG FGRKGREPIS PRRAGPSSND SWSGSRNFSS MNRELSRNMS  900
NKGFFNKAEN TSAAGEIVND SWGHGRDRET QQTNHWEKKQ NISSLETGVR STQSAVPSES  960
SPAGGSENSV AHLSTGVAQS AVNESEKIWH YKDPSGKVQG PFSMVQLRKW NHTGYFPANL  1020
RVWKNTEKEE DSILVTDALT GKFQKDPSFA DSSFPKAQMV HNSHLSPVHS GKSQGALFQR  1080
GTEGQAGGVS WGSQNEINSS SGRGTPQSVE VPKYSSDGWS TTNLPSPTPS QTPLGGARGQ  1140
AYESNWSPSP VHPGGSVLGG NGVLQPTAVV TPESALRASG NDRSSSLPGI NAAPKSENAT  1200
LLGSTTALRM HGQVTGSAPV LSNASMNQVA DVNNLVSNLQ NLVQSVTSRA PASDARGWGS  1260
GSVPKQEMTA SGPVPGSESQ PWGGAPSQRI EPNNAATVPA QHHTHGYWNN APSTNNAPSS  1320
MNTGNLAGNF PTSGFSGVPH SDPWRPPVPS NHTYIQPPAQ PQAPWGVGVP DNQSAVPRTG  1380
QENQNTSWVP MAGNPNVTWG GGPVPGNTNM NWGPPSQGPG WTAPSQGPVP GNAVTNWVPP  1440
GQGPPSVSAN PGWAPPGQGP TLGNANPGWS APNATQNGDR FSNQRDRGSH GDPGFGGGKP  1500
WNRQSSFGSG GGGGGSSRPP FRGQRVCRFF ESGHCKKGAS CDYLHPDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein