PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g020620.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 312aa    MW: 35450.8 Da    PI: 10.3993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g020620.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92e-148743399
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      s  ++++ ++gr+W++ l+ ++ + +  +++GW +Fv++n+Lk gD++vF l+++ + ++ v +fr+
  Pd.00g020620.m01  8 SGNVMFRVLDGRTWSLGLKCERAKPKARFQSGWFKFVRENNLKIGDVCVFVLVDDIRLTFEVVIFRA 74
                      44799*************999999999**************************99888899999986 PP
2B355.51e-17192279494
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       v +++++ + g l +  kf++eh ++ +++   +l+ ++gr+W v l   k++++ + +++GW +Fv++n+L+ gD++vF ++++++    v
  Pd.00g020620.m01 192 VVMHPSYIRAGYLHIGAKFIKEHLLN-RGHENAILRVSDGRTWPVSL--GKQGKGiVRFQTGWMKFVQDNQLEIGDVCVFVMTNDKRL-IDV 279
                       567888899999***********666.455689**************..777777799**********************97765444.444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MTRLSNNSGN VMFRVLDGRT WSLGLKCERA KPKARFQSGW FKFVRENNLK IGDVCVFVLV  60
DDIRLTFEVV IFRAIEAANT LSPDVHGEQT MSEMEETDED YDSVELLDYF PPCPKTRKKS  120
PIAPQPSKKN RTCSISTAEN NIKSVGGPSW SQKFLKRRPQ VHRRMNPVME SGTDRALLRA  180
KAFRPEYPSS TVVMHPSYIR AGYLHIGAKF IKEHLLNRGH ENAILRVSDG RTWPVSLGKQ  240
GKGIVRFQTG WMKFVQDNQL EIGDVCVFVM TNDKRLIDVV LFRATEAAKC TLSGEGNRRP  300
TISSSRKIKR EA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein