PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g023230.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25656 Da    PI: 9.6495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g023230.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.8e-213381149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      krie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++ss+gk++ +
  Pd.00g023230.m01 33 KRIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSSNGKVFCF 81
                      79*******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAKIKIPKSE IADNNNTSDG KKGSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSSNGKVFC FGTPNYDTVI NRYLGHHTAS LAAAGQPDHR ALLHGKTMRS  120
SNKQVENYVE ATRHLEAEKI SFKGEENNNC NYNSDYEQWL YEGREGGCGY GWWERPIPIG  180
MMSSLEELEE YKAALYKLKH NVEVRTNQMI RGSAPSNYYS SLLVMGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-15M-type_MADS family protein