PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g027280.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 247aa    MW: 27415.9 Da    PI: 9.2566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g027280.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.4e-143680147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +WT eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Pd.00g027280.m01 36 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 80
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MNSISSNNPQ SMGTASTPSD GSGKKVRKPY TITKSRESWT DEEHDKFLEA LQLFDRDWKK  60
IEDFVGSKTV IQIRSHAQKY FLKVQKSGTT AHVPPPRPKR KAAHPYPQKA SKNVLVPLQA  120
SIAYPSSMNA IASTYFPWDE TSIMINPASN QILLSHEEFT SFQGTEADIR SKGLARINKC  180
SLSGIESSSK TLPSSEIPEQ GKQAPLLHGI PDFSEVYSFI GSVFDPDSKG HAQKLREMDP  240
INFETVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.21e-101MYB_related family protein