PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g028520.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 246aa    MW: 27591.3 Da    PI: 6.3051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g028520.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-111682451798
                       E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +p +f +++ +++k   +t +l   + +sW v l +  + +++ ++ GW  F+ +n L++gD+++F+l+++++ +l v++fr
  Pd.00g028520.m01 168 HVPVSFSKHFiKLEK---QTAKLLV-RKKSWCVSL-IAHSVNTFPFSVGWAAFAWENCLRAGDVCIFELVDKNDISLEVHMFR 245
                       678888754454443...3555554.67*******.466777799************************99999999999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MSASLRQKID HEWPAFSATT PLFLKMILDD TSRDTKLGGS LVFKYDGNSK FQVCILDASG  60
TEIDHPLALP VMEETNEDDE NNSVEILEDY DDENDNSAEI FGDYQPCPKT RQKSGPLSCP  120
LPRKKTRLST HSSPEISSSS SKRVVEAANK FISNHSFRVT VGSSLMPHVP VSFSKHFIKL  180
EKQTAKLLVR KKSWCVSLIA HSVNTFPFSV GWAAFAWENC LRAGDVCIFE LVDKNDISLE  240
VHMFRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-12B3 family protein