PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g034070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 348aa MW: 39812.7 Da PI: 10.1911

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g034070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.5	5.9e-15	268	292	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+yG++C+FaHg Pd.00g034070.m01 268 KTELCNKWEETGTCPYGENCQFAHG 292 8***********************9 PP
2	zf-CCCH	25.1	3e-08	305	330	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr a++G C+yG rC+F H+ Pd.00g034070.m01 305 YKTQLCRMVAAGGKCPYGHRCHFRHS 330 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MELIAMVLVC KFMTIAREFF MPPKKHKFGL VSERSMLSNQ RSLYRASAKP ARPKLFLFLL 60 SNNPPVSFVS NEIKPKHQWF VYALNSVKSS LPMVHFQRLW SRSHQRTQLD LVDRLTQAQL 120 ILESQELRDH YDLCSAHLRD LADELDSLRR ENSHLRSANA DLVKLLSSQA AFQSFLLSSS 180 SPSAYQSPPT TSFLDDFRRL GFGSLGPRDG VVSDEASDIS PTSVIERNRF DVVDRVALPK 240 SISVRSSTRP RVQVQQSQVK VFNQGMVKTE LCNKWEETGT CPYGENCQFA HGVRELRPVM 300 RHPRYKTQLC RMVAAGGKCP YGHRCHFRHS LTERERLQLA VAAQTRFD

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MELIAMVLVC KFMTIAREFF MPPKKHKFGL VSERSMLSNQ RSLYRASAKP ARPKLFLFLL  60
SNNPPVSFVS NEIKPKHQWF VYALNSVKSS LPMVHFQRLW SRSHQRTQLD LVDRLTQAQL  120
ILESQELRDH YDLCSAHLRD LADELDSLRR ENSHLRSANA DLVKLLSSQA AFQSFLLSSS  180
SPSAYQSPPT TSFLDDFRRL GFGSLGPRDG VVSDEASDIS PTSVIERNRF DVVDRVALPK  240
SISVRSSTRP RVQVQQSQVK VFNQGMVKTE LCNKWEETGT CPYGENCQFA HGVRELRPVM  300
RHPRYKTQLC RMVAAGGKCP YGHRCHFRHS LTERERLQLA VAAQTRFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	2e-52	C3H family protein