PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g040510.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 373aa MW: 42351.9 Da PI: 6.1998

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g040510.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.9	1.6e-15	69	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ k+ ++++lg ++++e Aa ++ a++k++g Pd.00g040510.m01 69 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqnKKgRQVYLGAYDSEEAAAHTYDLAALKYWG 128 57*****************777799977447***********************98 PP
2	AP2	52.9	9e-17	171	223	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a+++a+ +++g+ Pd.00g040510.m01 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDRAAIEYRGA 223 89**99******99966...3.6***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MAVNFSALLL RARWSNEDVV IKTWPETPHL NQAENQKPKA KRIRKNQNNP TEKCQNGTNP 60 NTGGGRRSSI YRGVTRHRWT GRFEAHLWDK SSWNNIQNKK GRQVYLGAYD SEEAAAHTYD 120 LAALKYWGPG TTLNFPIETY TKELEEMQKA SREEYLASLR RRSSGFSRGV SKYRGVARHH 180 HNGRWEARIG RVFGNKYLYL GTYNTQEEAA AAYDRAAIEY RGANAVTNFD INNYIDKFKK 240 ESEETPPKCF DAGLPEDEKY PHLLHCIESN TMDQVMDAAD EHKFTWNFLD TGLMAQLPVP 300 DIPLDNKPLE LPDFFEDLRF EENFDLIFGA AGDADLGGLM ESAGCGVEEG DPRNLEDNRS 360 SSSPSSTTTS VSF

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MAVNFSALLL RARWSNEDVV IKTWPETPHL NQAENQKPKA KRIRKNQNNP TEKCQNGTNP  60
NTGGGRRSSI YRGVTRHRWT GRFEAHLWDK SSWNNIQNKK GRQVYLGAYD SEEAAAHTYD  120
LAALKYWGPG TTLNFPIETY TKELEEMQKA SREEYLASLR RRSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYNTQEEAA AAYDRAAIEY RGANAVTNFD INNYIDKFKK  240
ESEETPPKCF DAGLPEDEKY PHLLHCIESN TMDQVMDAAD EHKFTWNFLD TGLMAQLPVP  300
DIPLDNKPLE LPDFFEDLRF EENFDLIFGA AGDADLGGLM ESAGCGVEEG DPRNLEDNRS  360
SSSPSSTTTS VSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-93	AP2 family protein