PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g041910.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 222aa MW: 24579.7 Da PI: 6.4943

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g041910.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.1	1.4e-33	7	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeer...........edamsslvyeAearardPvyGavgvil 81 +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++l +++ +a+ ++ yeA+ar++dP+yG+v++i+ Pd.00g041910.m01 7 PCGACKFLRRKCIRGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLLSSKKkllaqlpvsdrCRAALTISYEAQARVQDPIYGCVSHIF 99 7***********************89***************999665555777777777799999****************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+ +l+a+la++ke+ Pd.00g041910.m01 100 ALQQQVISLQAQLASVKEQ 118 *************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGATHFAAI HKVFGASNVS KLLAQLLSSK 60 KKLLAQLPVS DRCRAALTIS YEAQARVQDP IYGCVSHIFA LQQQVISLQA QLASVKEQAA 120 KGFSNANPIE KYDTNVQSWP QSESSNILMP QSMNLNNIND SMLPFYSENK NSNSFEGDRN 180 FMIPEVLNDM YGSYGDGEAS NSMSSLDMQM SNMQWGFDQD QD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-56	LBD family protein