PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g042420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 260aa    MW: 28432.7 Da    PI: 6.1545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g042420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002498120123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C++ F ++  L  H++ H
  Pd.00g042420.m01  98 FSCNYCKRKFYSSQALGGHQNAH 120
                       89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MVTPNLNLEY ENDSEVTSQE NSNILLQEES PDLSKDSTTT SSCLTNQTNL QQQDPGPLSL  60
NLTLQFSSRD IELKGTGETS STEGAAPPTS EATMPRVFSC NYCKRKFYSS QALGGHQNAH  120
KRERTMAKRA MRMGMFPDRY TSLASLPLHG SAASAFRSLG IEAHAAVHQN IMIPSDQRLP  180
VPDTRGVARF QQGYFGVPMF MEEDDVGMFW PGSFRQVGEG VGGHHSNMQF SQNPTMNSGG  240
STMPPNTKTS SSSPDLTLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-48C2H2 family protein