PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g042850.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 583aa MW: 62776.4 Da PI: 9.7391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g042850.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pd.00g042850.m01 57 FICEVCNKGFQREQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	13.1	0.00028	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pd.00g042850.m01 133 WKCEKCSKRYAVQSDWKAHSKTC 155 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MTSTLKQHSS ATPSSNTTAA AAAPPPQKKR RNQPGNPNPD AEVIALSPKT LMATNRFICE 60 VCNKGFQREQ NLQLHRRGHN LPWKLKQKTT KEPRRKVYLC PEPTCVHHDP SRALGDLTGI 120 KKHFSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF 180 CDALAQESAR HPSSLNTMGG QLYGNNHMSL GLSQIPSLQN QTHLPSNMLR LGNAGGAKYE 240 HLITPSNPSS FGSQAMPNSS NFFMRDIANQ QGFQDQHQFP SKAALHGLMQ LPDLHSNGNN 300 NNSPSSTSAA NLFNLSFFSN NSTSSSLTPP DHQFSDGNGG GQGFSMGAAD HHNMGSATLP 360 SLYGNSMQHE SNIAPHMSAT ALLQKAAQMG STTSTESSSL LRGLGNSSTR AAKSGRQLVS 420 APSAVGVSFS GDHHSSGAEQ QHLRSSQQVD NENHLQGLMN SLASGGSSVF GGGGVHGQDH 480 NSFGGFSSGS TGTRVNAMDQ QHNNTNYDEA KLHQNLGVSF GGSDKLTLDF LGVGGMVRNM 540 SGGHGYSQRD HHQQHHGINM IGTLDPELKS AQASQPFGGT AMQ

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MTSTLKQHSS ATPSSNTTAA AAAPPPQKKR RNQPGNPNPD AEVIALSPKT LMATNRFICE  60
VCNKGFQREQ NLQLHRRGHN LPWKLKQKTT KEPRRKVYLC PEPTCVHHDP SRALGDLTGI  120
KKHFSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF  180
CDALAQESAR HPSSLNTMGG QLYGNNHMSL GLSQIPSLQN QTHLPSNMLR LGNAGGAKYE  240
HLITPSNPSS FGSQAMPNSS NFFMRDIANQ QGFQDQHQFP SKAALHGLMQ LPDLHSNGNN  300
NNSPSSTSAA NLFNLSFFSN NSTSSSLTPP DHQFSDGNGG GQGFSMGAAD HHNMGSATLP  360
SLYGNSMQHE SNIAPHMSAT ALLQKAAQMG STTSTESSSL LRGLGNSSTR AAKSGRQLVS  420
APSAVGVSFS GDHHSSGAEQ QHLRSSQQVD NENHLQGLMN SLASGGSSVF GGGGVHGQDH  480
NSFGGFSSGS TGTRVNAMDQ QHNNTNYDEA KLHQNLGVSF GGSDKLTLDF LGVGGMVRNM  540
SGGHGYSQRD HHQQHHGINM IGTLDPELKS AQASQPFGGT AMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-117	C2H2 family protein