PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g046540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23930.1 Da    PI: 10.1819
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g046540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.83.2e-192468145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k+i+n+s  qvtfskRr+g++ KA+ LS LC+aeva+++fs++g+
  Pd.00g046540.m01 24 KKIQNTSSLQVTFSKRRTGLFRKASQLSALCGAEVAILVFSPHGR 68
                      689***************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSDDSSSTVT QQKRTMGRKK IDIKKIQNTS SLQVTFSKRR TGLFRKASQL SALCGAEVAI  60
LVFSPHGRPF VFGHPSVDSV ISRLASTSTR AECMHTSGDD EETQSSIVQS NLAHSSTTYQ  120
TSPDKESLRL RLRIGGGRSM GLVKEETQEV AEAWSGGHGF WWDQPTEKMK LHELKQFKTS  180
LEDLRAKVGM QLDEMARRKL ATRDFLGVYR NGSCG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-36M-type_MADS family protein