PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g049180.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 188aa MW: 20866.1 Da PI: 5.2901

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g049180.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	165.9	5.1e-52	2	96	8	102
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 ++ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prde Pd.00g049180.m01 2 QDIEQASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDE 94 579*****************************************************************************************9 PP NF-YC 101 lk 102 lk Pd.00g049180.m01 95 LK 96 75 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MQDIEQASDF KNHSLPLARI KKIMKADEDV RMISAEAPVI FAKACEIFIL ELTLRSWIHT 60 EENKRRTLQK NDIAAAISRT DVFDFLVDII PRDELKEEGL GVTKATIPVV GSPADIPYYY 120 VPQQHPVGAP GMIMGKPVDQ AAIYAAQQPR PPMAFMPWHS SRSPKLLEMS FNTVGLVGDC 180 DAVDCAVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	71	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	8e-77	NF-YC family protein